- AMBER-based Portal Server for NMR structures (AMPS-NMR)
Amber (acronym to Assisted Model Building with Energy Refinement) is a suite of programs
that allow users
to perform molecular dynamics (MD) simulations on biological
This web portal makes available the entire functionality of AMBER, in particular (but not only) using NMR-derived information as restraints for MD.
To use AMPS-NMR you have to register to WeNMR grid infrastructure
You can access a trial version of the service using username guest and password guest
NB: the trial version will not allow you to submit jobs on the WeNMR grid.
Reference for use of the AMPS-NMR server:
Bioinformatics, 27, 2384-2390 (2011).
A Grid-enabled web portal for NMR structure refinement with AMBER.
Bertini I, Case DA, Ferella L, Giachetti A, Rosato A.